8PJT
Crystal structure of the computationally designed SAKe6DEref protein
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-25 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.867023 |
Spacegroup name | P 1 |
Unit cell lengths | 58.531, 58.531, 78.706 |
Unit cell angles | 90.00, 90.00, 82.15 |
Refinement procedure
Resolution | 39.350 - 1.700 |
R-factor | 0.1821 |
Rwork | 0.180 |
R-free | 0.22280 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.012 |
RMSD bond angle | 1.271 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.680 | 1.730 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.071 | 0.391 |
Rmeas | 0.091 | 0.499 |
Rpim | 0.056 | 0.305 |
Total number of observations | 273253 | 12941 |
Number of reflections | 110541 | 5406 |
<I/σ(I)> | 7.5 | 2.1 |
Completeness [%] | 97.1 | |
Redundancy | 2.5 | 2.4 |
CC(1/2) | 0.991 | 0.909 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293.15 | 0.2 M Magnesium chloride, 0.1 M Tris pH 7, 10% PEG 8000 |