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8PIR

Crystal structure of Ser33 in complex with 3-PGA (3-phosphoglycerate)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALBA BEAMLINE XALOC
Synchrotron siteALBA
BeamlineXALOC
Temperature [K]100
Detector technologyPIXEL
Collection date2021-02-26
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.9793
Spacegroup nameP 1
Unit cell lengths60.599, 95.726, 109.252
Unit cell angles69.92, 89.53, 86.06
Refinement procedure
Resolution60.450 - 2.700
R-factor0.217
Rwork0.215
R-free0.24490
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.013
RMSD bond angle1.662
Data reduction softwareautoPROC
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX ((1.19.2_4158: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]60.4502.797
High resolution limit [Å]2.7002.700
Number of reflections619406232
<I/σ(I)>13.012.61
Completeness [%]97.7
Redundancy3.5
CC(1/2)0.9980.905
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2910.2M 1,6-Hexanediol; 0.2M 1-Butanol; 0.2M 1,2-Propanediol; 0.2M 2-Propanol; 0.2M 1,4-Butanediol; 0.2M 1,3-Propanediol 0.1M Sodium HEPES; MOPS (acid) pH=7.5 20% v/v Glycerol; 10% w/v PEG 4000 7.4 mg/ml of protein in 25 mM Tris pH=7.5 and 150 mM NaCl

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PDB entries from 2025-04-30

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