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8PGP

Crystal structure of the metallo-beta-lactamase VIM1 with 3193

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04-1
Synchrotron siteDiamond
BeamlineI04-1
Temperature [K]100
Detector technologyPIXEL
Collection date2020-02-02
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.91190
Spacegroup nameP 1 21 1
Unit cell lengths39.260, 67.470, 40.090
Unit cell angles90.00, 93.66, 90.00
Refinement procedure
Resolution28.930 - 0.970
R-factor0.1273
Rwork0.127
R-free0.13410
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.011
RMSD bond angle1.218
Data reduction softwarexia2
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]33.8801.000
High resolution limit [Å]0.9700.970
Rmerge0.0500.524
Rmeas0.0540.591
Rpim0.0210.267
Number of reflections1127277122
<I/σ(I)>17.22.3
Completeness [%]91.878.7
Redundancy6.54.6
CC(1/2)0.9990.823
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.52932.2M ammonium phosphate 0.1M TrisHCl, pH 8.5

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