8PGM
Crystal structure of the metallo-beta-lactamase VIM1 with 3062
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04 |
| Synchrotron site | Diamond |
| Beamline | I04 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2019-11-23 |
| Detector | DECTRIS EIGER2 XE 16M |
| Wavelength(s) | 0.97950 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 39.420, 67.830, 40.080 |
| Unit cell angles | 90.00, 93.28, 90.00 |
Refinement procedure
| Resolution | 28.900 - 1.270 |
| R-factor | 0.1295 |
| Rwork | 0.128 |
| R-free | 0.15580 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.013 |
| RMSD bond angle | 1.503 |
| Data reduction software | xia2 |
| Data scaling software | Aimless |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 34.040 | 1.300 |
| High resolution limit [Å] | 1.270 | 1.270 |
| Rmerge | 0.050 | 0.869 |
| Rmeas | 0.055 | 0.959 |
| Rpim | 0.021 | 0.395 |
| Number of reflections | 54022 | 3620 |
| <I/σ(I)> | 16.2 | 1.8 |
| Completeness [%] | 97.4 | 89.5 |
| Redundancy | 6.8 | 5.6 |
| CC(1/2) | 0.999 | 0.708 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 2.2M ammonium phosphate 0.1M TrisHCl, pH 8.5 |
