8PF5
Crystal structure of Trypanosoma brucei trypanothione reductase in complex with 1-(3,4-dichlorobenzyl)-4-(((5-((4-fluorophenethyl)carbamoyl)furan-2-yl)methyl)carbamoyl)-1-(3-phenylpropyl)piperazin-1-ium
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ELETTRA BEAMLINE 11.2C |
Synchrotron site | ELETTRA |
Beamline | 11.2C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-12-21 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 100.960, 63.311, 169.112 |
Unit cell angles | 90.00, 98.40, 90.00 |
Refinement procedure
Resolution | 55.830 - 2.420 |
R-factor | 0.19329 |
Rwork | 0.190 |
R-free | 0.25741 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.570 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP (11.7.03) |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 167.300 | 2.570 |
High resolution limit [Å] | 2.420 | 2.420 |
Number of reflections | 81239 | 12995 |
<I/σ(I)> | 11.56 | 2.08 |
Completeness [%] | 99.8 | |
Redundancy | 5.8 | |
CC(1/2) | 0.997 | 0.764 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 13-15% PEG3350, 22-24% MPD, 40 mM imidazole pH 7.5, 50 mM NaBr |