8P95
Crystal structure of the metallo-beta-lactamase VIM1 with 2407
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-10-13 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97624 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 39.520, 68.030, 40.270 |
Unit cell angles | 90.00, 93.55, 90.00 |
Refinement procedure
Resolution | 39.440 - 1.090 |
R-factor | 0.1208 |
Rwork | 0.120 |
R-free | 0.13640 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.021 |
RMSD bond angle | 1.680 |
Data reduction software | xia2 |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.440 | 1.120 |
High resolution limit [Å] | 1.090 | 1.090 |
Rmerge | 0.058 | 0.424 |
Rmeas | 0.063 | 0.492 |
Rpim | 0.025 | 0.241 |
Number of reflections | 86313 | 5402 |
<I/σ(I)> | 15 | 3.2 |
Completeness [%] | 97.6 | |
Redundancy | 6.2 | |
CC(1/2) | 0.999 | 0.824 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 2.2M ammonium phosphate 0.1M TrisHCl, pH 8.5 |