8P8S
Recombinant Ym2 crystal structure
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-10-20 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 51.090, 59.900, 59.880 |
Unit cell angles | 90.00, 94.14, 90.00 |
Refinement procedure
Resolution | 37.450 - 1.170 |
R-factor | 0.158 |
Rwork | 0.158 |
R-free | 0.16700 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.010 |
RMSD bond angle | 1.070 |
Data reduction software | XDS (VERSION Mar 15, 2019 BUILT=20190315) |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.3) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 59.730 | 1.240 |
High resolution limit [Å] | 1.170 | 1.170 |
Rmeas | 0.080 | 0.358 |
Number of reflections | 119183 | 18719 |
<I/σ(I)> | 15.12 | 4.74 |
Completeness [%] | 98.4 | 95.9 |
Redundancy | 6.76 | |
CC(1/2) | 0.999 | 0.925 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 293 | 0.1 M sodium acetate pH 6.0 and 200 mM CaCl |