8P89
X-ray structure of cardiotoxic light chain H3 in complex to neutralizing nanobody B5
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID30B |
Synchrotron site | ESRF |
Beamline | ID30B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-06-14 |
Detector | DECTRIS EIGER2 X 9M |
Wavelength(s) | 1 |
Spacegroup name | I 41 2 2 |
Unit cell lengths | 145.215, 145.215, 245.184 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 124.945 - 3.187 |
R-factor | 0.2313 |
Rwork | 0.229 |
R-free | 0.27640 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.743 |
Data scaling software | STARANISO |
Phasing software | PHASER |
Refinement software | PHENIX ((1.14_3260: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 124.945 | 3.550 |
High resolution limit [Å] | 3.180 | 3.180 |
Number of reflections | 14056 | 10713 |
<I/σ(I)> | 6.7 | |
Completeness [%] | 99.6 | |
Redundancy | 11.5 | |
CC(1/2) | 0.990 | 0.770 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 295 | 1.5 M Ammonium sulfate, 0.1M Tris-HCl pH 8.0 |