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8P5A

Crystal structure of the main protease (3CLpro/Mpro) of SARS-CoV-2 obtained in presence of 5 millimolar X77 enantiomer R.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsELETTRA BEAMLINE 11.2C
Synchrotron siteELETTRA
Beamline11.2C
Temperature [K]100
Detector technologyPIXEL
Collection date2021-06-02
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.9718
Spacegroup nameP 21 21 21
Unit cell lengths67.568, 100.247, 103.919
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution49.320 - 1.660
R-factor0.1669
Rwork0.166
R-free0.18890
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7bb2
RMSD bond length0.009
RMSD bond angle1.153
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]103.9201.690
High resolution limit [Å]1.6601.660
Rmerge0.097
Number of reflections836744042
<I/σ(I)>14
Completeness [%]99.7
Redundancy11
CC(1/2)0.9990.661
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2930.12 M Diethylene glycol 0.12M Triethylene glycol 0.12M Tetraethylene glycol 0.12M Pentaethylene glycol, 0.1 M Tris/bicine pH 8.5, 20% v/v Ethylene glycol, 10% w/v PEG 8000

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