8P5A
Crystal structure of the main protease (3CLpro/Mpro) of SARS-CoV-2 obtained in presence of 5 millimolar X77 enantiomer R.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ELETTRA BEAMLINE 11.2C |
Synchrotron site | ELETTRA |
Beamline | 11.2C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-06-02 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9718 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 67.568, 100.247, 103.919 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.320 - 1.660 |
R-factor | 0.1669 |
Rwork | 0.166 |
R-free | 0.18890 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7bb2 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.153 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 103.920 | 1.690 |
High resolution limit [Å] | 1.660 | 1.660 |
Rmerge | 0.097 | |
Number of reflections | 83674 | 4042 |
<I/σ(I)> | 14 | |
Completeness [%] | 99.7 | |
Redundancy | 11 | |
CC(1/2) | 0.999 | 0.661 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.12 M Diethylene glycol 0.12M Triethylene glycol 0.12M Tetraethylene glycol 0.12M Pentaethylene glycol, 0.1 M Tris/bicine pH 8.5, 20% v/v Ethylene glycol, 10% w/v PEG 8000 |