Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8P58

Crystal structure of the main protease (3CLpro/Mpro) of SARS-CoV-2 obtained in presence of 500 micromolar X77 enantiomer R.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsELETTRA BEAMLINE 11.2C
Synchrotron siteELETTRA
Beamline11.2C
Temperature [K]100
Detector technologyPIXEL
Collection date2021-06-02
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.9718
Spacegroup nameP 21 21 21
Unit cell lengths67.688, 100.828, 104.329
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution49.480 - 1.550
R-factor0.1599
Rwork0.159
R-free0.17900
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7bb2
RMSD bond length0.012
RMSD bond angle1.183
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]104.3301.580
High resolution limit [Å]1.5501.550
Rmerge0.107
Number of reflections1041435143
<I/σ(I)>12.5
Completeness [%]100.0
Redundancy10.8
CC(1/2)0.9990.653
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2930.12M 1,6-Hexanediol 0.12M 1-Butanol 0.12M 1,2-Propanediol 0.12M 2-Propanol 0.12M 1,4-Butanediol 0.12M 1,3-Propanediol, 0.1 M Tris/Bicine pH 8.5, 20% v/v Ethylene glycol 10% w/v PEG 8000

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon