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8P4Q

Structure of the IMP dehydrogenase related protein GUAB3 from Synechocystis PCC 6803

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALBA BEAMLINE XALOC
Synchrotron siteALBA
BeamlineXALOC
Temperature [K]100
Detector technologyPIXEL
Collection date2022-07-08
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.979263470491
Spacegroup nameP 21 21 21
Unit cell lengths123.980, 131.680, 182.495
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution49.040 - 1.880
R-factor0.1793
Rwork0.178
R-free0.19670
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.005
RMSD bond angle0.684
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.21rc1_4933)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]49.0401.930
High resolution limit [Å]1.8801.880
Rmeas0.0730.806
Number of reflections2192437407
<I/σ(I)>14.210.67
Completeness [%]90.435.3
Redundancy4.61.18
CC(1/2)0.9990.550
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP295Crystals were grown in the presence of XMP and NAD+ in mother liquor from the condition 1-10 of the commercial screen Morpheus (Molecular Dimensions), which consists of a salt mixture (0.03M Magnesium chloride hexahydrate and 0.03M Calcium chloride dihydrate), a precipitant mix (20% v/v Ethylene glycol and 10 % w/v PEG 8000), and 0.1M of a buffer system (Tris-base, Bicine) adjusted at pH 8.5. Initial concentrations: Protein = 12.5 mg/mL XMP = 3 mM NAD = 3 mM

222036

PDB entries from 2024-07-03

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