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8P1S

Bifidobacterium asteroides alpha-L-fucosidase (TT1819) in complex with fucose.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I24
Synchrotron siteDiamond
BeamlineI24
Temperature [K]100
Detector technologyPIXEL
Collection date2017-07-05
DetectorDECTRIS PILATUS3 X 6M
Wavelength(s)0.97625
Spacegroup nameP 21 21 21
Unit cell lengths89.058, 142.765, 167.202
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution83.741 - 1.900
Rwork0.169
R-free0.20690
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.014
RMSD bond angle1.924
Data reduction softwarexia2
Data scaling softwareDIALS
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0405)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]108.560108.5601.930
High resolution limit [Å]1.90010.4101.900
Rmerge0.2460.0519.946
Rmeas0.2620.05410.726
Rpim0.0860.0183.866
Number of reflections1678611678618235
<I/σ(I)>9.2
Completeness [%]100.0
Redundancy17.515.514.9
CC(1/2)0.9980.9990.215
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2930.12M Diethylene glycol; 0.12M Triethylene glycol; 0.12M Tetraethylene glycol; 0.12M Pentaethylene glycol, 0.1M Tris (base); BICINE pH 8.5, 10% v/v MPD; 10% PEG 1000; 10% w/v PEG 3350

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PDB entries from 2024-06-19

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