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8OX3

Structure of the murine LYVE-1 (lymphatic vessel endothelial receptor-1) hyaluronan binding domain bound with octasaccharide hyaluronan.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I24
Synchrotron siteDiamond
BeamlineI24
Temperature [K]100
Detector technologyPIXEL
Collection date2017-03-10
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.9686
Spacegroup nameC 1 2 1
Unit cell lengths86.107, 56.963, 30.908
Unit cell angles90.00, 106.27, 90.00
Refinement procedure
Resolution46.900 - 1.050
R-factor0.1512
Rwork0.151
R-free0.16290
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.012
RMSD bond angle1.189
Data reduction softwarexia2
Data scaling softwarexia2
Phasing softwarePHENIX
Refinement softwarePHENIX (1.21rc1_4899)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.9501.070
High resolution limit [Å]1.0501.050
Rmeas0.1011.075
Number of reflections46097193
<I/σ(I)>11.1
Completeness [%]83.0
Redundancy6.4
CC(1/2)1.0000.400
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.529320% PEG5000, 0.1M bis-Tris pH6.5, 18 mg/ml

247536

PDB entries from 2026-01-14

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