8ORX
Structure of the murine LYVE-1 (lymphatic vessel endothelial receptor-1) hyaluronan binding domain in an unliganded state
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-09-29 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9686 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 31.370, 58.320, 52.350 |
Unit cell angles | 90.00, 94.62, 90.00 |
Refinement procedure
Resolution | 29.160 - 1.540 |
R-factor | 0.1706 |
Rwork | 0.169 |
R-free | 0.19470 |
Structure solution method | SAD |
RMSD bond length | 0.006 |
RMSD bond angle | 0.857 |
Data reduction software | autoPROC (1.0.5) |
Data scaling software | autoPROC (1.0.5) |
Phasing software | PHENIX (1.18.2_3874) |
Refinement software | PHENIX (1.21rc1_4899) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.160 | 1.640 |
High resolution limit [Å] | 1.540 | 1.540 |
Rmeas | 0.067 | |
Number of reflections | 18090 | 2315 |
<I/σ(I)> | 16 | |
Completeness [%] | 100.0 | |
Redundancy | 6.5 | |
CC(1/2) | 1.000 | 0.800 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 25% PEG3350 0.1M bis-Tris. Protein concentration 17.6 mg/ml. |