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8OQH

Structure of the cytosolic domain of lysosome-associated TMEM55B

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyPIXEL
Collection date2023-03-10
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.97918
Spacegroup nameP 1 21 1
Unit cell lengths29.412, 84.445, 32.177
Unit cell angles90.00, 98.32, 90.00
Refinement procedure
Resolution42.220 - 1.760
R-factor0.1957
Rwork0.194
R-free0.22400
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.015
RMSD bond angle1.361
Data reduction softwareXDS (20220110)
Data scaling softwareAimless (0.7.8)
Phasing softwarePHASER (1.20.1_4487)
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]42.2201.823
High resolution limit [Å]1.7601.760
Rmerge0.1141.378
Rmeas0.133
Rpim0.0670.800
Number of reflections151731517
<I/σ(I)>6.67
Completeness [%]98.1
Redundancy3.8
CC(1/2)0.9940.493
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2880.1M Tris pH8.5, 0.2M Sodium acetate trihydrate, 30% w/v PEG 4000

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PDB entries from 2024-07-17

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