8OQH
Structure of the cytosolic domain of lysosome-associated TMEM55B
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-03-10 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97918 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 29.412, 84.445, 32.177 |
Unit cell angles | 90.00, 98.32, 90.00 |
Refinement procedure
Resolution | 42.220 - 1.760 |
R-factor | 0.1957 |
Rwork | 0.194 |
R-free | 0.22400 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.015 |
RMSD bond angle | 1.361 |
Data reduction software | XDS (20220110) |
Data scaling software | Aimless (0.7.8) |
Phasing software | PHASER (1.20.1_4487) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.220 | 1.823 |
High resolution limit [Å] | 1.760 | 1.760 |
Rmerge | 0.114 | 1.378 |
Rmeas | 0.133 | |
Rpim | 0.067 | 0.800 |
Number of reflections | 15173 | 1517 |
<I/σ(I)> | 6.67 | |
Completeness [%] | 98.1 | |
Redundancy | 3.8 | |
CC(1/2) | 0.994 | 0.493 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 288 | 0.1M Tris pH8.5, 0.2M Sodium acetate trihydrate, 30% w/v PEG 4000 |