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8KE3

PylRS C-terminus domain mutant bound with D-3-trifluoromethylphenylalanine and AMPNP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSRRC BEAMLINE BL15A1
Synchrotron siteNSRRC
BeamlineBL15A1
Temperature [K]110
Detector technologyCCD
Collection date2017-03-27
DetectorRAYONIX MX300HE
Wavelength(s)1
Spacegroup nameP 64
Unit cell lengths104.670, 104.670, 71.813
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution34.261 - 1.900
R-factor0.185072516224
Rwork0.184
R-free0.20729
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2zce
RMSD bond length0.008
RMSD bond angle1.028
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX (1.11.1_2575)
Refinement softwarePHENIX (1.11.1_2575)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]35.00035.0001.970
High resolution limit [Å]1.9004.0901.900
Rmeas0.0920.0380.970
Rpim0.0340.0140.371
Number of reflections3499335183481
<I/σ(I)>21.4
Completeness [%]98.9
Redundancy6.9
CC(1/2)0.9980.745
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.5293100 mM HEPES buffer at pH 7.5, 10% PEG 8000, 10% Ethylene Glycerol

223532

PDB entries from 2024-08-07

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