8K3D
Crystal structure of NRF1 DBD bound to DNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-X |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-07-14 |
Detector | RIGAKU HyPix-3000 |
Wavelength(s) | 1.54184 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 63.843, 64.706, 98.522 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 23.050 - 2.300 |
R-factor | 0.1963 |
Rwork | 0.194 |
R-free | 0.23900 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.015 |
Data reduction software | CrysalisPro (CrysAlisPro 1.171.42.36a) |
Data scaling software | CrysalisPro |
Phasing software | PHASER |
Refinement software | PHENIX ((1.19_4092: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 23.050 | 2.380 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.080 | 0.331 |
Number of reflections | 9050 | 889 |
<I/σ(I)> | 7 | 1.6 |
Completeness [%] | 97.3 | |
Redundancy | 2.9 | |
CC(1/2) | 0.993 | 0.874 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.2 M Ammonium sulfate, 0.1 M Bis-Tris (pH 6.5), and 25% (w/v) Polyethylene glycol 3350 |