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8K05

Pseudouridine 5'-monophosphate glycosylase from Arabidopsis thaliana -- sulfate bound holoenzyme

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPAL/PLS BEAMLINE 7A (6B, 6C1)
Synchrotron sitePAL/PLS
Beamline7A (6B, 6C1)
Temperature [K]100
Detector technologyCCD
Collection date2019-04-09
DetectorADSC QUANTUM 270
Wavelength(s)0.979
Spacegroup nameP 21 3
Unit cell lengths121.126, 121.126, 121.126
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution28.550 - 1.450
R-factor0.2058
Rwork0.206
R-free0.21710
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.006
RMSD bond angle1.059
Data scaling softwareHKL-2000
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.500
High resolution limit [Å]1.4503.1201.450
Rmerge0.1110.0543.706
Rmeas0.1130.0553.794
Rpim0.0240.0120.810
Total number of observations2288355
Number of reflections1045281068710315
<I/σ(I)>6
Completeness [%]99.999.2100
Redundancy21.920.621.9
CC(1/2)0.9990.9990.455
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.52950.1M Cacodylate pH6.5, 1.4M Ammonium sulfate

225946

PDB entries from 2024-10-09

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