8JUH
Crystal structure of ScFv against the receptor binding domine of SARS-CoV-2 S-spike protein
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SSRF BEAMLINE BL02U1 |
| Synchrotron site | SSRF |
| Beamline | BL02U1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2023-01-01 |
| Detector | DECTRIS EIGER X 16M |
| Wavelength(s) | 0.979 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 60.210, 77.753, 61.346 |
| Unit cell angles | 90.00, 112.25, 90.00 |
Refinement procedure
| Resolution | 55.790 - 2.210 |
| R-factor | 0.25953 |
| Rwork | 0.257 |
| R-free | 0.30959 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.008 |
| RMSD bond angle | 1.595 |
| Data reduction software | HKL-2000 |
| Data scaling software | HKL-2000 |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 77.750 | 2.270 |
| High resolution limit [Å] | 2.210 | 2.210 |
| Rmerge | 0.693 | 2.980 |
| Rmeas | 0.758 | 3.273 |
| Rpim | 0.301 | 1.327 |
| Total number of observations | 172092 | 12384 |
| Number of reflections | 26361 | 1947 |
| <I/σ(I)> | 4.1 | 1.6 |
| Completeness [%] | 100.0 | |
| Redundancy | 6.5 | 6.4 |
| CC(1/2) | 0.708 | 0.118 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 289.15 | 25% Polyethylene glycol 3350,0.1 M HEPES,PH7.5 |
