8JTK
Structure of AYWB phytoplasma SAP05 recognizing AtRpn10
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL10U2 |
Synchrotron site | SSRF |
Beamline | BL10U2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-12-17 |
Detector | DECTRIS EIGER2 S 9M |
Wavelength(s) | 0.979183 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 49.240, 49.240, 215.154 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 24.930 - 1.570 |
R-factor | 0.1883 |
Rwork | 0.187 |
R-free | 0.21540 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.033 |
Data scaling software | Aimless (0.7.7) |
Phasing software | PHENIX (1.19.2_4158) |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 71.720 | 1.650 |
High resolution limit [Å] | 1.570 | 1.570 |
Rmerge | 0.056 | 0.768 |
Rmeas | 0.060 | 0.831 |
Rpim | 0.021 | 0.314 |
Number of reflections | 42242 | 6330 |
<I/σ(I)> | 18 | 2.6 |
Completeness [%] | 95.9 | 100 |
Redundancy | 8.2 | |
CC(1/2) | 0.999 | 0.736 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.2 M Sodium malonate pH 5.0, 20% w/v Polyethylene glycol 3,350 |