8JQF
Structure of CmCBDA in complex with Ni2+ and Glycerol
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-03-20 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9798 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 67.228, 60.017, 86.635 |
Unit cell angles | 90.00, 110.92, 90.00 |
Refinement procedure
Resolution | 30.670 - 1.850 |
R-factor | 0.1627 |
Rwork | 0.161 |
R-free | 0.19640 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.015 |
RMSD bond angle | 1.276 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.19.2_4158)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.000 | 40.000 | 1.920 |
High resolution limit [Å] | 1.850 | 3.980 | 1.850 |
Rmerge | 0.186 | 0.096 | 1.032 |
Rmeas | 0.206 | 0.106 | 1.162 |
Rpim | 0.086 | 0.044 | 0.520 |
Total number of observations | 289091 | ||
Number of reflections | 54006 | 5574 | 5164 |
<I/σ(I)> | 4.8 | ||
Completeness [%] | 97.8 | 98.4 | 94.4 |
Redundancy | 5.4 | 5.6 | 4.1 |
CC(1/2) | 0.988 | 0.566 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2 M Sodium sulfate, 20% PEG 8000, 10mM NiSO4, 10 mM GlcNAc |