8JQ0
Crystal structure of ZBTB48 ZF10-11-C in complex with CIITA promoter
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-12-02 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9785 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 126.563, 46.864, 79.047 |
Unit cell angles | 90.00, 124.89, 90.00 |
Refinement procedure
Resolution | 39.440 - 2.900 |
R-factor | 0.2361 |
Rwork | 0.233 |
R-free | 0.29120 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5yj3 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.473 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.000 | 40.000 | 2.950 |
High resolution limit [Å] | 2.900 | 7.850 | 2.900 |
Rmerge | 0.117 | 0.069 | 0.867 |
Rmeas | 0.128 | 0.076 | 0.954 |
Rpim | 0.050 | 0.031 | 0.388 |
Total number of observations | 52860 | ||
Number of reflections | 8503 | 455 | 406 |
<I/σ(I)> | 4.9 | ||
Completeness [%] | 98.9 | 99.6 | 91.4 |
Redundancy | 6.2 | 6.1 | 5 |
CC(1/2) | 0.989 | 0.992 | 0.815 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2 M Ammonium acetate, 0.1 M bis-Tris pH 5.5, 25% w/v PEG 3350 |