8JMJ
Structure of Helicobacter pylori Soj-DNA-Spo0J complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE TPS 05A |
Synchrotron site | NSRRC |
Beamline | TPS 05A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2022-12-07 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 0.99984 |
Spacegroup name | P 1 |
Unit cell lengths | 75.178, 75.193, 81.116 |
Unit cell angles | 71.34, 71.46, 67.70 |
Refinement procedure
Resolution | 28.565 - 2.570 |
R-factor | 0.2275 |
Rwork | 0.224 |
R-free | 0.30170 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6iuc |
RMSD bond length | 0.011 |
RMSD bond angle | 1.774 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.2_1309) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 2.660 |
High resolution limit [Å] | 2.570 | 5.530 | 2.570 |
Rmerge | 0.039 | 0.020 | 0.321 |
Rmeas | 0.028 | 0.455 | |
Rpim | 0.020 | 0.321 | |
Number of reflections | 46674 | 4711 | 4658 |
<I/σ(I)> | 11.1 | ||
Completeness [%] | 96.5 | 97.4 | 96.2 |
Redundancy | 1.9 | 2 | 1.8 |
CC(1/2) | 0.998 | 0.778 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 298 | 0.1 M MES and 25% Ethylene glycol |