8JI7
Crystal structure of AetD in complex with L-tryptophan and two Fe2+
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE TPS 05A |
Synchrotron site | NSRRC |
Beamline | TPS 05A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-05-19 |
Detector | DECTRIS EIGER2 X 9M |
Wavelength(s) | 0.9998 |
Spacegroup name | P 41 |
Unit cell lengths | 65.353, 65.353, 117.269 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 23.420 - 1.610 |
R-factor | 0.22384 |
Rwork | 0.221 |
R-free | 0.27563 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.663 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 25.000 | 25.000 | 1.670 |
High resolution limit [Å] | 1.610 | 3.470 | 1.610 |
Rmerge | 0.037 | 0.027 | 0.623 |
Rmeas | 0.042 | 0.031 | 0.689 |
Rpim | 0.019 | 0.014 | 0.293 |
Total number of observations | 313433 | ||
Number of reflections | 63234 | 6241 | 6318 |
<I/σ(I)> | 22.7 | ||
Completeness [%] | 99.5 | 97.1 | 99.8 |
Redundancy | 5 | 4.3 | 5.3 |
CC(1/2) | 0.996 | 0.996 | 0.845 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.01 M nickel chloride, 20% PEG 2000 MME, 0.1 M Tris, pH 8.5 |