8JI3
Crystal structure of AetD in complex with 5,7-dibromo-L-tryptophan and two Fe2+
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE TPS 05A |
Synchrotron site | NSRRC |
Beamline | TPS 05A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-05-19 |
Detector | DECTRIS EIGER2 X 9M |
Wavelength(s) | 0.9998 |
Spacegroup name | P 41 |
Unit cell lengths | 65.497, 65.497, 117.118 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 23.440 - 1.780 |
R-factor | 0.19585 |
Rwork | 0.193 |
R-free | 0.24361 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.010 |
RMSD bond angle | 1.591 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 25.000 | 25.000 | 1.840 |
High resolution limit [Å] | 1.780 | 3.830 | 1.780 |
Rmerge | 0.053 | 0.037 | 0.675 |
Rmeas | 0.061 | 0.043 | 0.758 |
Rpim | 0.030 | 0.022 | 0.341 |
Total number of observations | 210445 | ||
Number of reflections | 47258 | 4731 | 4708 |
<I/σ(I)> | 15.7 | ||
Completeness [%] | 99.7 | 98.5 | 100 |
Redundancy | 4.5 | 3.7 | 4.8 |
CC(1/2) | 0.991 | 0.997 | 0.835 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.01 M nickel chloride, 20% PEG 2000 MME, 0.1 M Tris, pH 8.5 |