8JDU
Crystal structure of mLDHD in complex with 2-ketovaleric acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL02U1 |
Synchrotron site | SSRF |
Beamline | BL02U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-04-17 |
Detector | DECTRIS EIGER2 S 9M |
Wavelength(s) | 0.9792 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 81.727, 102.960, 122.278 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.570 - 1.670 |
R-factor | 0.1812 |
Rwork | 0.180 |
R-free | 0.19880 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 1.081 |
Data reduction software | xia2 |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.18.2_3874: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 64.010 | 1.760 |
High resolution limit [Å] | 1.670 | 1.670 |
Rmerge | 0.047 | 0.611 |
Rmeas | 0.051 | 0.670 |
Rpim | 0.018 | 0.269 |
Total number of observations | 467811 | 49737 |
Number of reflections | 60435 | 8660 |
<I/σ(I)> | 22 | 2.9 |
Completeness [%] | 99.9 | |
Redundancy | 7.7 | 5.7 |
CC(1/2) | 0.999 | 0.844 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 289 | 4.0 M sodium formate |