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8JAH

Crystal structure of human CLEC12A C-type lectin domain

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL19U1
Synchrotron siteSSRF
BeamlineBL19U1
Temperature [K]100
Detector technologyPIXEL
Collection date2019-11-23
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.97853
Spacegroup nameP 61 2 2
Unit cell lengths50.012, 50.012, 367.627
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution43.010 - 2.580
R-factor0.2076
Rwork0.205
R-free0.26300
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.003
RMSD bond angle0.587
Data scaling softwareXDS
Phasing softwarePHENIX (1.20.1_4487)
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]43.0102.670
High resolution limit [Å]2.5802.580
Rmerge0.2060.953
Number of reflections8840751
<I/σ(I)>13.3571.462
Completeness [%]92.4
Redundancy13.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP289.1520% (w/v) PEG 3350, 0.2 M Potassium sulfate

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PDB entries from 2026-02-04

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