8J53
Crystal structure of Bacteroides salyersiae GH31 alpha-galactosidase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-5A |
Synchrotron site | Photon Factory |
Beamline | BL-5A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-05-15 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.000 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 200.521, 157.535, 131.408 |
Unit cell angles | 90.00, 116.82, 90.00 |
Refinement procedure
Resolution | 48.635 - 3.500 |
Rwork | 0.257 |
R-free | 0.31280 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.498 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0405) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.635 | 3.620 |
High resolution limit [Å] | 3.500 | 3.500 |
Rmerge | 0.168 | 1.050 |
Rmeas | 0.199 | 1.238 |
Rpim | 0.106 | 0.651 |
Number of reflections | 45955 | 4479 |
<I/σ(I)> | 9.3 | 2 |
Completeness [%] | 99.9 | |
Redundancy | 6.8 | |
CC(1/2) | 0.996 | 0.797 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 16% PEG 3350, 40 mM citric acid, 60 mM bis-tris propane |