8J2J
Crystal structure of a bright green fluorescent protein (StayGold) with single mutation (Y187F) in jellyfish Cytaeis uchidae from Biortus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL45XU |
Synchrotron site | SPring-8 |
Beamline | BL45XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-10-27 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1 |
Spacegroup name | P 61 |
Unit cell lengths | 134.580, 134.580, 58.449 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 19.730 - 1.900 |
Rwork | 0.160 |
R-free | 0.20550 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | AlphaFold |
RMSD bond length | 0.007 |
RMSD bond angle | 1.567 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 19.730 | 1.940 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.121 | 0.626 |
Number of reflections | 47721 | 3190 |
<I/σ(I)> | 8.9 | |
Completeness [%] | 99.9 | |
Redundancy | 4.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2 M Ammonium sulfate,0.1 M BisTris pH5.5, 25% PEG 3350 |