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8IX6

Crystal structure of Pyruvic Oxime Dioxygenase (POD) from Bradyrhizobium sp. WSM3983

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE BL-1A
Synchrotron sitePhoton Factory
BeamlineBL-1A
Temperature [K]95
Detector technologyPIXEL
Collection date2017-12-15
DetectorDECTRIS EIGER X 4M
Wavelength(s)2.7
Spacegroup nameI 4 3 2
Unit cell lengths153.896, 153.896, 153.896
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution76.950 - 2.470
R-factor0.2314
Rwork0.230
R-free0.25770
Structure solution methodSAD
RMSD bond length0.002
RMSD bond angle0.514
Data scaling softwareXDS
Phasing softwareCRANK2
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]76.9502.510
High resolution limit [Å]2.4702.470
Rmerge0.0871.766
Number of reflections11546569
<I/σ(I)>43.9
Completeness [%]100.0
Redundancy38.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2981.56M ammonium sulfate, 25% (v/v) glycerol

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