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8IIU

anti-VEGF nanobody

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL18U1
Synchrotron siteSSRF
BeamlineBL18U1
Temperature [K]100
Detector technologyPIXEL
Collection date2021-07-07
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.987
Spacegroup nameP 1
Unit cell lengths31.468, 39.369, 39.952
Unit cell angles102.14, 90.23, 90.95
Refinement procedure
Resolution24.590 - 1.270
R-factor0.168
Rwork0.167
R-free0.18690
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5imk
RMSD bond length0.005
RMSD bond angle0.910
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwarePHASER
Refinement softwarePHENIX (1.19.2)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]24.5901.315
High resolution limit [Å]1.2701.270
Number of reflections465934515
<I/σ(I)>16
Completeness [%]94.0
Redundancy3.4
CC(1/2)0.9740.743
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.5294.15(NH4)2SO4, HEPES (pH=7.5), NDSB-195

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