8IIC
Crystal structure of Israeli acute paralysis virus RNA-dependent RNA polymerase delta40 mutant (residues 41-546)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-11 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 62 2 2 |
Unit cell lengths | 167.926, 167.926, 218.321 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 23.780 - 3.250 |
R-factor | 0.2131 |
Rwork | 0.211 |
R-free | 0.24590 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 8iib |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.17.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 23.800 | 23.800 | 3.370 |
High resolution limit [Å] | 3.250 | 6.950 | 3.250 |
Rmerge | 0.071 | 0.028 | 0.841 |
Rmeas | 0.075 | 0.029 | 0.883 |
Rpim | 0.023 | 0.009 | 0.266 |
Total number of observations | 295009 | ||
Number of reflections | 28880 | 3064 | 2858 |
<I/σ(I)> | 8.4 | ||
Completeness [%] | 98.8 | 97.1 | 99.5 |
Redundancy | 10.2 | 9.4 | 10.5 |
CC(1/2) | 0.999 | 0.957 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 289 | Ammonium sulfate |