8IIA
Crystal structure of the oligomeric state of the extracellular domain of human myelin protein zero(MPZ/P0)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL32XU |
Synchrotron site | SPring-8 |
Beamline | BL32XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-04-01 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.0 |
Spacegroup name | I 4 2 2 |
Unit cell lengths | 88.579, 88.579, 88.988 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.270 - 2.090 |
R-factor | 0.2174 |
Rwork | 0.217 |
R-free | 0.23190 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1neu |
RMSD bond length | 0.005 |
RMSD bond angle | 0.696 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.18_3845) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.490 | 2.140 |
High resolution limit [Å] | 2.090 | 2.090 |
Rmerge | 0.141 | 3.297 |
Rpim | 0.028 | 0.634 |
Number of reflections | 10861 | 815 |
<I/σ(I)> | 13.9 | 1.1 |
Completeness [%] | 100.0 | 99.5 |
Redundancy | 26.8 | 27.4 |
CC(1/2) | 0.998 | 0.815 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 100 mM Tris-HCl, 300 mM magnesium-formate |