8II8
X-ray crystal structure of pink-colored protein from Pleurotus salmoneostramineus in complex with natural chromophore
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL44XU |
Synchrotron site | SPring-8 |
Beamline | BL44XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-07-29 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 58.879, 31.895, 107.416 |
Unit cell angles | 90.00, 95.94, 90.00 |
Refinement procedure
Resolution | 30.560 - 1.250 |
Rwork | 0.131 |
R-free | 0.16410 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | artificial helices without side chain |
RMSD bond length | 0.012 |
RMSD bond angle | 1.723 |
Data reduction software | XDS (Jan 10, 2022 BUILT=20220820) |
Data scaling software | Aimless (0.7.9) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0352) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.560 | 30.560 | 1.270 |
High resolution limit [Å] | 1.250 | 6.850 | 1.250 |
Rmerge | 0.071 | 0.065 | 0.276 |
Rmeas | 0.098 | 0.091 | 0.383 |
Rpim | 0.068 | 0.064 | 0.264 |
Number of reflections | 54840 | 355 | 2689 |
<I/σ(I)> | 9.4 | 14.3 | 3.8 |
Completeness [%] | 99.1 | 94.1 | 98.6 |
Redundancy | 3.4 | 3 | 3.3 |
CC(1/2) | 0.990 | 0.971 | 0.896 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 9 | 293 | PEG4000, sodium formate, Tris-HCl |