8IGI
Crystal structure of HP1526 (XthA)- a base excision DNA repair protein in Helicobacter pylori
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NW12A |
Synchrotron site | Photon Factory |
Beamline | AR-NW12A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-12-16 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 72.096, 71.909, 108.033 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.050 - 1.840 |
R-factor | 0.168 |
Rwork | 0.167 |
R-free | 0.19550 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 0.932 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.13-2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 37.050 | 1.870 |
High resolution limit [Å] | 1.840 | 1.840 |
Rmerge | 0.119 | 0.625 |
Number of reflections | 49482 | 2445 |
<I/σ(I)> | 7 | |
Completeness [%] | 100.0 | |
Redundancy | 7.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 18% (w/v) PEG 4K, 104 mM HEPES pH 7.5 with 1,3 butanediol |