8IE8
Crystal structure of DAPK1 in complex with isorhapontigenin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-1A |
Synchrotron site | Photon Factory |
Beamline | BL-1A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-10-22 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 1 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 46.755, 62.222, 88.225 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.378 - 1.750 |
R-factor | 0.1862 |
Rwork | 0.184 |
R-free | 0.21620 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 0.826 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.110 | 1.810 |
High resolution limit [Å] | 1.750 | 1.750 |
Rmeas | 0.077 | 0.757 |
Number of reflections | 26205 | 2544 |
<I/σ(I)> | 18 | 2.6 |
Completeness [%] | 98.2 | |
Redundancy | 7.6 | |
CC(1/2) | 0.999 | 0.834 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | PEG400, ammonium sulfate, Bis-tris pH 6.5 |