8I74
Crystal structure of decarboxylated osteocalcin at pH 8.5
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-5A |
Synchrotron site | Photon Factory |
Beamline | BL-5A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-11-15 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1 |
Spacegroup name | P 41 |
Unit cell lengths | 42.799, 42.799, 37.937 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.263 - 1.360 |
R-factor | 0.1768 |
Rwork | 0.176 |
R-free | 0.18910 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 0.871 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.800 | 1.410 |
High resolution limit [Å] | 1.360 | 1.360 |
Rmeas | 0.039 | 0.510 |
Number of reflections | 14857 | 1481 |
<I/σ(I)> | 29.5 | 3.9 |
Completeness [%] | 99.8 | |
Redundancy | 8.11 | |
CC(1/2) | 0.999 | 0.922 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | Ammonium sulfate, Tris-HCl pH 8.5 |