8I3J
Crystal structure of human inner-arm dynein heavy chain d stalk and microtubule binding domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL44XU |
Synchrotron site | SPring-8 |
Beamline | BL44XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-08-05 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97938 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 147.468, 147.468, 85.075 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 42.570 - 2.690 |
R-factor | 0.2582 |
Rwork | 0.258 |
R-free | 0.26790 |
Structure solution method | SAD |
RMSD bond length | 0.010 |
RMSD bond angle | 1.422 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | SHELXCD |
Refinement software | PHENIX (1.19.2-4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.850 |
High resolution limit [Å] | 2.690 | 2.690 |
Rmerge | 0.123 | |
Rmeas | 0.125 | 2.062 |
Rpim | 0.020 | |
Number of reflections | 28811 | 4588 |
<I/σ(I)> | 24.83 | 2.12 |
Completeness [%] | 98.7 | 98.3 |
Redundancy | 20.9 | 19.4 |
CC(1/2) | 1.000 | 0.975 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | Potassium sodium tartrate tetrahydrate, PEG 3350 |