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8HZJ

A new fluorescent RNA aptamer bound with N571

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL19U1
Synchrotron siteSSRF
BeamlineBL19U1
Temperature [K]100
Detector technologyPIXEL
Collection date2018-09-13
DetectorDECTRIS PILATUS 6M
Wavelength(s)1.102
Spacegroup nameC 1 2 1
Unit cell lengths89.316, 48.173, 58.304
Unit cell angles90.00, 116.03, 90.00
Refinement procedure
Resolution29.370 - 2.600
R-factor0.1919
Rwork0.188
R-free0.25870
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)8hze
RMSD bond length0.005
RMSD bond angle1.095
Data reduction softwareHKL-3000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX ((1.18.2_3874: ???))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.640
High resolution limit [Å]2.6007.0502.600
Rmerge0.0790.0460.454
Rmeas0.0860.0510.494
Rpim0.0330.0200.191
Number of reflections6872357346
<I/σ(I)>4.5
Completeness [%]98.696.296.1
Redundancy6.76.46.3
CC(1/2)0.9990.931
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2890.08 M Sodium Chloride, 0.02 M Magnesium Chloride, 0.04 M Sodium Cacodylate trihydrate pH6.0, 35%MPD, 0.012 M Spermine tetrahydrochloride

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PDB entries from 2024-06-26

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