8HZE
A new fluorescent RNA aptamer bound with N
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-05-05 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97892 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 76.151, 45.870, 57.116 |
Unit cell angles | 90.00, 115.08, 90.00 |
Refinement procedure
Resolution | 38.190 - 1.590 |
R-factor | 0.2011 |
Rwork | 0.200 |
R-free | 0.23370 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.004 |
RMSD bond angle | 0.965 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.18.2_3874: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.660 |
High resolution limit [Å] | 1.590 | 3.450 | 1.600 |
Rmerge | 0.098 | 0.078 | 0.581 |
Rmeas | 0.107 | 0.085 | 0.628 |
Rpim | 0.041 | 0.033 | 0.237 |
Number of reflections | 23824 | 2424 | 2370 |
<I/σ(I)> | 6.2 | ||
Completeness [%] | 99.6 | 98.6 | 100 |
Redundancy | 6.7 | 6.7 | 6.9 |
CC(1/2) | 1.000 | 0.995 | 0.890 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | 0.05 M magnesium chloride, 0.1 M HEPES pH 7.5, 30% polyethylene glycol monomethyl ether 550, 0.6% 1,6-diaminohexane |