8HYH
Structure of amino acid dehydrogenase3448
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NW12A |
Synchrotron site | Photon Factory |
Beamline | AR-NW12A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-02 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.0 |
Spacegroup name | P 63 2 2 |
Unit cell lengths | 149.621, 149.621, 137.394 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.970 - 2.390 |
R-factor | 0.18517 |
Rwork | 0.184 |
R-free | 0.21121 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.013 |
RMSD bond angle | 1.894 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.020 | 2.480 |
High resolution limit [Å] | 2.390 | 2.390 |
Rmerge | 0.154 | 1.677 |
Rmeas | 0.158 | 1.724 |
Rpim | 0.035 | 0.397 |
Total number of observations | 716056 | 69276 |
Number of reflections | 36433 | 3740 |
<I/σ(I)> | 21.1 | 2.3 |
Completeness [%] | 100.0 | |
Redundancy | 19.7 | 18.5 |
CC(1/2) | 0.999 | 0.714 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 293 | iron (III) chloride, Jeffamine M-600, sodium citrate buffer, NAD, pyruvate |