8HYE
Structure of amino acid dehydrogenase-2752 with ligand
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-5A |
Synchrotron site | Photon Factory |
Beamline | BL-5A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-11-23 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.0 |
Spacegroup name | P 64 2 2 |
Unit cell lengths | 194.601, 194.601, 158.472 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.690 - 2.200 |
R-factor | 0.18472 |
Rwork | 0.183 |
R-free | 0.22535 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.815 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0257) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.240 |
High resolution limit [Å] | 2.200 | 5.970 | 2.200 |
Rmerge | 0.106 | 0.042 | 0.736 |
Total number of observations | 1737760 | ||
Number of reflections | 89460 | 8576 | 8235 |
<I/σ(I)> | 4.3 | ||
Completeness [%] | 99.8 | 100 | 97 |
Redundancy | 10.2 | 10.4 | 8.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 2-propanol, PEG 4000, Hepes buffer, NAD, pyruvate |