8HQ9
Crystal structure of the MlaD domain of the MlaD protein from Escherichia coli (Form II)
Experimental procedure
| 実験手法 | SINGLE WAVELENGTH |
| Source type | ROTATING ANODE |
| Source details | RIGAKU MICROMAX-007 HF |
| Temperature [K] | 100 |
| Detector technology | IMAGE PLATE |
| Collection date | 2020-01-07 |
| Detector | RIGAKU RAXIS IV++ |
| Wavelength(s) | 1.5418 |
| Spacegroup name | P 21 2 21 |
| 格子定数 [Å] | 60.420, 106.950, 117.120 |
| 格子定数 [度] | 90.00, 90.00, 90.00 |
精密化法
| 分解能 | 78.980 - 2.700 |
| R因子 | 0.20686 |
| Rwork | 0.204 |
| R-free | 0.26108 |
| Structure solution method | MOLECULAR REPLACEMENT |
| 結合長の平均二乗偏差(RMSD) [Å] | 0.012 |
| 結合角の平均二乗偏差(RMSD) [度] | 1.827 |
| Data reduction software | MOSFLM (7.4.0) |
| Data scaling software | Aimless (0.7.9) |
| Phasing software | PHASER (2.8.3) |
| Refinement software | REFMAC (5.8.0352) |
Quality characteristics
| Overall | Outer shell | |
| 分解能 [Å] (低) | 79.100 | 2.830 |
| 分解能 [Å] (高) | 2.700 | 2.700 |
| Rmerge_l_obs | 0.148 | 0.612 |
| Rmeas | 0.157 | 0.650 |
| Rpim | 0.052 | 0.216 |
| Total number of observations | 190212 | 24884 |
| 独立反射数 | 21557 | 2805 |
| <I/σ(I)> | 12.6 | 3.9 |
| 完全性 [%] | 100.0 | |
| 冗長性 | 8.8 | 8.9 |
| CC(1/2) | 0.996 | 0.943 |
結晶化条件
| 結晶ID | 方法 | pH | 温度 | 溶液条件 |
| 1 | MICROBATCH | 5 | 293 | 0.2 M magnesium chloride hexahydrate, 0.1 M sodium citrate tribasic dihyrate pH 5.0, 10% (w/v) PEG 20000 |
