8HMX
WDR5 in complex with histone H3Q5his peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL02U1 |
Synchrotron site | SSRF |
Beamline | BL02U1 |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2022-10-14 |
Detector | DECTRIS EIGER2 S 9M |
Wavelength(s) | 0.97918 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 113.187, 46.857, 65.297 |
Unit cell angles | 90.00, 112.58, 90.00 |
Refinement procedure
Resolution | 31.960 - 1.700 |
R-factor | 0.1698 |
Rwork | 0.168 |
R-free | 0.19280 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 0.871 |
Data reduction software | DENZO |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.9) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.730 |
High resolution limit [Å] | 1.700 | 4.610 | 1.700 |
Rmerge | 0.970 | 0.091 | 0.482 |
Total number of observations | 122911 | ||
Number of reflections | 34866 | 3388 | 3268 |
<I/σ(I)> | 10.9 | ||
Completeness [%] | 96.3 | 98.4 | 96.1 |
Redundancy | 1.9 | 1.9 | 2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.1 M sodium citrate tribasic dihydrate (pH 5.5), 22% polyethylene glycol (PEG) 3350, and 0.1% n-Octyl-beta-D-glucoside |