8HMO
Crystal Structure of metal-dependent hydrolase complexed with manganese from Bacillus smithii
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-11-22 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.9800 |
Spacegroup name | P 1 2 1 |
Unit cell lengths | 90.210, 70.198, 104.839 |
Unit cell angles | 90.00, 105.77, 90.00 |
Refinement procedure
Resolution | 43.450 - 2.530 |
R-factor | 0.2528 |
Rwork | 0.250 |
R-free | 0.29870 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 1.492 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.910 | 2.630 |
High resolution limit [Å] | 2.530 | 2.530 |
Rmerge | 0.101 | 0.549 |
Rmeas | 0.121 | 0.649 |
Rpim | 0.066 | 0.343 |
Number of reflections | 41332 | 4429 |
<I/σ(I)> | 8.2 | 2.2 |
Completeness [%] | 97.3 | 99.9 |
Redundancy | 3.3 | 3.5 |
CC(1/2) | 0.952 | 0.745 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.2 | 293 | 35% 2-ethoxyethanol, 0.1 M Na/K phosphate buffer pH 6.2, 0.2 M NaCl |