8HFA
The structure of chitin deacetylase VdPDA1 from Verticillium dahliae
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-03-22 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97915 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 138.617, 125.899, 127.007 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.360 - 2.640 |
R-factor | 0.1934 |
Rwork | 0.192 |
R-free | 0.22700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2iw0 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.988 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.700 |
High resolution limit [Å] | 2.640 | 2.640 |
Rmerge | 0.144 | 0.520 |
Number of reflections | 65718 | 3227 |
<I/σ(I)> | 4.1 | |
Completeness [%] | 100.0 | |
Redundancy | 13.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 1.1M Sodium malonate, 0.1M HEPES pH 7.0, 0.5% v/v Jeffamine ED-2001 |