8HES
Crystal structure of SARS-CoV-2 RBD and NIV-10 complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-09-14 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 53.147, 101.113, 134.265 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.310 - 2.200 |
R-factor | 0.1983 |
Rwork | 0.196 |
R-free | 0.24080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7eam |
RMSD bond length | 0.008 |
RMSD bond angle | 1.024 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.310 | 2.270 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.152 | |
Rmeas | 0.164 | |
Rpim | 0.062 | |
Number of reflections | 36935 | 3145 |
<I/σ(I)> | 7.8 | |
Completeness [%] | 98.2 | |
Redundancy | 6.9 | |
CC(1/2) | 0.991 | 0.722 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2M Sodium nitrate, 20% PEG 3350 |