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8HES

Crystal structure of SARS-CoV-2 RBD and NIV-10 complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06SA
Synchrotron siteSLS
BeamlineX06SA
Temperature [K]100
Detector technologyPIXEL
Collection date2022-09-14
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.0
Spacegroup nameP 21 21 21
Unit cell lengths53.147, 101.113, 134.265
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.310 - 2.200
R-factor0.1983
Rwork0.196
R-free0.24080
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7eam
RMSD bond length0.008
RMSD bond angle1.024
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.3102.270
High resolution limit [Å]2.2002.200
Rmerge0.152
Rmeas0.164
Rpim0.062
Number of reflections369353145
<I/σ(I)>7.8
Completeness [%]98.2
Redundancy6.9
CC(1/2)0.9910.722
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2930.2M Sodium nitrate, 20% PEG 3350

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PDB entries from 2024-07-17

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