8HDA
Crystal structure of Ubl1 (residues 18-111) of SARS-CoV-2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-06-26 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9285 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 45.530, 46.333, 70.077 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.810 - 1.930 |
Rwork | 0.184 |
R-free | 0.22870 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7wzo |
RMSD bond length | 0.009 |
RMSD bond angle | 1.536 |
Data reduction software | HKL-3000 |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 19.810 | 1.980 |
High resolution limit [Å] | 1.930 | 1.930 |
Rmerge | 0.094 | 0.359 |
Rpim | 0.041 | 0.222 |
Number of reflections | 11583 | 693 |
<I/σ(I)> | 10.7 | 2.7 |
Completeness [%] | 99.3 | 91.5 |
Redundancy | 6 | 3.2 |
CC(1/2) | 0.995 | 0.848 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 15% w/v PEG 1500 |