8HCT
Crystal structure of Cu2+ binding to Dendrorhynchus zhejiangensis ferritin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NFPSS BEAMLINE BL18U |
Synchrotron site | NFPSS |
Beamline | BL18U |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-08 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.979 |
Spacegroup name | I 4 3 2 |
Unit cell lengths | 151.011, 151.011, 151.011 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 106.780 - 2.260 |
R-factor | 0.16689 |
Rwork | 0.164 |
R-free | 0.22639 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.019 |
RMSD bond angle | 1.779 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | BALBES |
Refinement software | REFMAC (ccp4-7.0.024) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 106.900 | 2.970 |
High resolution limit [Å] | 1.380 | 1.380 |
Rmerge | 0.065 | |
Rmeas | 0.069 | |
Rpim | 0.022 | |
Number of reflections | 13361 | 68702 |
<I/σ(I)> | 5.3 | |
Completeness [%] | 80.7 | |
Redundancy | 7.6 | |
CC(1/2) | 0.997 | 0.999 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291.15 | 0.2 M sodium citrate tribasic dihydrate, 0.1 M Tris hydrochloride pH 8.5, 30% v/v polyethyene glycol 400 |