8HBB
Crystal structure of Caenorhabditis elegans NMAD-1 in complex with ligand III
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 293 |
Detector technology | PIXEL |
Collection date | 2022-01-06 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9793 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 183.176, 75.328, 118.184 |
Unit cell angles | 90.00, 113.19, 90.00 |
Refinement procedure
Resolution | 47.180 - 3.090 |
R-factor | 0.2606 |
Rwork | 0.260 |
R-free | 0.28180 |
Structure solution method | AB INITIO PHASING |
RMSD bond length | 0.012 |
RMSD bond angle | 1.657 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | BALBES |
Refinement software | PHENIX ((1.18.2_3874: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.150 |
High resolution limit [Å] | 3.050 | 3.050 |
Number of reflections | 35949 | 26900 |
<I/σ(I)> | 14.84 | |
Completeness [%] | 90.9 | |
Redundancy | 5.8 | |
CC(1/2) | 0.959 | 0.959 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 289 | 20% PEG 4000, 100 mM Na Caco pH 5.6 |